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Workshop Booklet for MDSC1102...

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College of Medicine and Public Health

MDSC1102 SKILLS FOR MEDICAL SCIENTISTS 1 STUDENT WORKSHOP BOOKLET 2021

Dr Elke Sokoya MDSC1102 Topic Coordinator 6E:136, FMC  8204 5983  [email protected]

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i MDSC1102 Skills for Medical Scientists 1

Skills for Medical Scientists 1

CONTENTS Timetable ......................................................................................................................................................................................iii Teaching Team Contact Details ................................................................................................................................................v Welcome and Overview ............................................................................................................................................................vi WIFI AND QR CODES ......................................................................................................................................................................vii WiFi Connection to Eduroam .............................................................................................................................................vii QR Code Scanner for Mobile Devices ..............................................................................................................................vii Workshop 1.................................................................................................................................................................................. 1 Disease Outbreak Investigation ......................................................................................................................................... 1 Our Team’s Charter .................................................................................................................................................................... 4 Team Roles ................................................................................................................................................................................... 9 Guidelines For Uploading Documents to FLO ............................................................................................................ 11 Workshop 2................................................................................................................................................................................ 13 Literature Review Exemplar .............................................................................................................................................. 13 Workshop 3................................................................................................................................................................................ 20 Database Searching Computer Lab ................................................................................................................................. 20 Workshop 4................................................................................................................................................................................ 30 Data Analysis ......................................................................................................................................................................... 30 Workshop 5................................................................................................................................................................................ 33 Experimental Design and Analysis ................................................................................................................................... 33 Workshop 6................................................................................................................................................................................ 38 Calculations in Biomedical Labs ....................................................................................................................................... 38 Appendix..................................................................................................................................................................................... 47 Location of Workshops ....................................................................................................................................................... 47

ii MDSC1102 Skills for Medical Scientists 1

Timetable

MDSC1102 - Skills for Medical Scientists 1 Timetable - Semester 1, 2021 Week Week 1

Topic INTRODUCTION TO THE TOPIC CLINICAL RESEARCH AND ETHICS/CLINICAL STUDY DESIGNS

Week 2

Format

Date

Time

Location

Elke Sokoya

L1

Mon 1-Mar

1:00-1:50

Collaborate

Mark Slee

L2 and L3

PUBLIC HOLIDAY

Tue 2-Mar

EPIDEMIOLOGY AND DISEASE OUTBREAKS

Emma Miller Elke Sokoya

L4 Workshop 1 COMPULSORY

Tue 9-Mar

Short Pre-recorded Presentations Collaboration and Teamwork Part 1 and 2 (Urs ula Bronicki)

Pre-recordings Oral Pres entations Series (SLSS)

Mon 8-Mar

DISEASE OUTBREAK INVESTIGATION WORKSHOP (Start of Assignment 1 - Group Allocation & Team Charter Completion)

Week 3

Lecturer

9:00-9:50

Collaborate

Thu 11-Mar

Class 1

1:00-2:50

Class 2

3:00-4:50

Level 4 Seminar Area

EPIDEMIOLOGICAL STUDY DESIGNS

Emma Miller

L5

Mon 15-Mar

1:00-1:50

Collaborate

What is Evidence? (SLSS) Integrating Evidence (SLSS)

SEARCHING THE LITERATURE

Library Staff

L6

Tue 16-Mar

9:00-9:50

Collaborate

Using Turnitin (SLSS)

Elke Sokoya

L7

Mon 22-Mar

1:00-1:50

Collaborate

Academic Writing (SLSS)

Collaborate

Referencing Fundamentals (SLSS) How to Reference (SLSS) Quick Intro to Vancouver Style Guide (SLSS) Endnote (SLSS)

NO WORKSHOP

Week 4

WRITING A LITERATURE REVIEW

FINDING HEALTH STATISTICS AND SYSTEMATIC REVIEWS

LITERATURE REVIEW EXEMPLAR (Analysis of Sample Literature Review)

Week 5

Library Staff

Elke Sokoya

L8

Workshop 2 COMPULSORY

Tue 23-Mar

9:00-9:50

Thu 25-Mar

Class 1

1:00-2:50

Class 2

3:00-4:50

DISSECTING A SCIENTIFIC ARTICLE ANIMAL RESEARCH AND ETHICS

Level 4 Seminar Area

Elke Sokoya

L9

Mon 29-Mar

1:00-1:50

Collaborate

Dani Dixon

L10

Tue 30-Mar

9:00-9:50

Collaborate

Communication in Medical Research (Elke Sokoya)

NO WORKSHOP

Week 6

PUBLIC HOLIDAY

Critical Thinking (SLSS) Smart Reading (SLSS)

Mon 5-Apr

EXPERIMENTAL DESIGN AND ANALYSIS

Elke Sokoya

DATABASE SEARCHING COMPUTER LAB (Start of Assignment 2 - Provision of Topics)

Library Staff

L11

Tue 6-Apr

Computer Lab Workshop 3 COMPULSORY

Thu 8-Apr

9:00-9:50

Class 1

10:00-10:50

Class 2

11:00-11:50

Class 3

12:30-1:20

Class 4

1:30-2:20

Class 5

3:00-3:50

Class 6

4:00-4:50

Collaborate

Microscopy Lab

MID-SEMESTER BREAK

iii MDSC1102 Skills for Medical Scientists 1

Week 7

PUBLIC HOLIDAY STATISTICS IN MEDICAL RESEARCH I

Mon 26-Apr

1:00-1:50

Collaborate

Stephen Gregory

L12

Tue 27-Apr

9:00-9:50

Collaborate

Stephen Gregory

L13

Mon 3-May

1:00-1:50

Collaborate

Belinda Lunnay

L14

Tue 4-May

9:00-9:50

Collaborate

Stephen Gregory

Workshop 4 COMPULSORY

Thu 6-May

NO WORKSHOP Week 8

STATISTICS IN MEDICAL RESEARCH II QUALITATIVE RESEARCH I DATA ANALYSIS: STATISTICS WORKSHOP

Week 9

Week 10

Thu 29-Apr

Class 1

1:00-2:50

Class 2

3:00-4:50

QUALITATIVE RESEARCH II

Level 4 Seminar Area

Belinda Lunnay

L15

Mon 10-May

1:00-1:50

Collaborate

FUNDING MEDICAL RESEARCH

Alyce Martin

L16

Tue 11-May

9:00-9:50

Collaborate

EXPERIMENTAL DESIGN AND ANALYSIS

Elke Sokoya

Workshop 5 COMPULSORY

Thu 13-May

Class 1

1:00-2:50

Class 2

3:00-4:50

Level 4 Seminar Area

GRANT PROPOSALS BASIC RESEARCH: THEORETICAL PARADIGMS

Alyce Martin

L17

Mon 17-May

Anya Arthurs

L18

Tue 18-May

1:00-1:50 9:00-9:50

Collaborate Collaborate

NO WORKSHOP Week 11

Week 12

BASIC RESEARCH: OMICS AND PRECISION MEDICINE

Karen Lower

L19

Mon 24-May

1:00-1:50

Collaborate

CALCULATIONS IN BIOMEDICAL LABS

Elke Sokoya

Tue 25-May

9:00-9:50

Collaborate

CALCULATIONS IN BIOMEDICAL LABS WORKSHOP

Elke Sokoya

L20 Workshop 6 COMPULSORY

Class 1

1:00-2:50

Class 2

3:00-4:50

Level 4 Seminar Area

Thu 27-May

eHEALTH AND MEDICAL RESEARCH

Niranjan Bidargaddi

L21

Mon 31-May

1:00-1:50

Collaborate

THE FUTURE OF MEDICAL SCIENCE

Elke Sokoya

L22

Tue 1-Jun

9:00-9:50

Collaborate

NO WORKSHOP

Rooms in the Flinders Medical Centre (FMC) Level 4 Seminar Area = 4E303 Microscopy Lab = 5D218

Students need to register into one of the workshop classes and one of the computer labs. Please attend ONLY this session. * If you are absent from this workshop, it is your responsibility to contact Tarryn Gagliardi ASAP so that you can be placed into a group.

FIRE TRAINING AND ACADEMIC INTEGRITY TUTORIAL IS ON FLO. IT IS MANDATORY FOR STUDENTS TO WATCH THE RECORDINGS AND COMPLETE THE QUIZZES.

Please bring your laptop

Please bring your phone to register your completion of the workshop tasks

Closed shoes must be worn in the Microscopy Lab

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T eaching T eam Contact Details Topic Coordinator Dr Elke Sokoya College of Medicine and Public Health Tel: 8204 5983 Email: [email protected]

Workshop Coordinators Dr Stephen Gregory College of Medicine and Public Health Tel: 8204 7146 Email: [email protected] Dr Elke Sokoya Contact details above Library Teaching and Learning Team Tel: 1300 354 633 Email: [email protected] Book individual consultations: https://libraryflin.flinders.edu.au/services/bookings/book-a-librarian

Workshop Support Any student who misses a workshop can request the workshop documentation from the topic coordinator. If you are unable to attend Workshop 1, you will need to contact Tarryn Gagliardi as soon as possible to be placed into a group. Mrs Tarryn Gagliardi Student Administration Services Assistant College of Medicine and Public Health Tel: 7221 8379 Email: [email protected]

Facilitators will be present at workshops to assist students with the material.

MDSC1102 FACILITATORS Caitlin Allman Sara Ashtiani Sarah Badaoui Acelya Bal Aarushi Bassetti Affia Chohan Amlan Chowdhury

Tom Dodsworth Sam Goldsmith Mhyles Hintural Maciej Kasprzak Sam Ligertwood Bridget Mooney Brett Robinson

Keanna Sagpan Jack Scanlan Nadine Smith Anniepreet Tuteja Deb van Gyen Leela White

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Welcome and Overview Welcome to the Workshops for MDSC1102! Five 2-hour workshops will be held across the semester and there will be one 1-hour computer lab. There is a choice of time for you to attend the workshop and computer lab. You will need to REGISTER into only ONE workshop class and ONE computer lab. It is important that you consistently attend the workshop that you have registered in. Workshops will not be repeated on other days. Students who do not register before the end of Week 1, will automatically be placed into a workshop and computer lab. These workshops have been specifically designed to support your learning by providing an opportunity for you to apply your knowledge, that has been disseminated in lectures, to guided activities. The small group format allows you to engage with your peers, addresses gaps in your knowledge and helps you develop skills in critical thinking, problem-solving and communication. Students will be randomly allocated into small groups at the beginning of the workshop. The workshops will be overseen by a staff member however you will be guided through the workshops by a student who has previously completed MDSC1102 and shown exemplary communication skills. Note that the ability to effectively participate within a group is an important learning outcome of this topic. Important information that will help you all to achieve good group outcomes: • ALWAYS start group work early – it is often hard to get everyone together in the same place at the same time • Electing a chairperson and ‘secretary’ (scribe) can help to facilitate the group process and improve outcomes • Good communication with EVERY member in the group is absolutely essential, no matter how hard • Communication within groups is a JOINT RESPONSIBILITY: the group must ensure all members are included in group activities; it is also the responsibility of EACH individual student to maintain contact with the group • Meetings should be organised so that ALL members can attend. It is reasonable to expect that students will make an effort to be flexible and adjust personal commitments to facilitate group meetings • Group work is INCLUSIVE and all group members must be treated with respect • Tasks must be shared equally and responsibly – no single individual should dominate the group • If there are difficulties within the group (between individuals or to do with activities or ‘process’) it is essential that you work together to overcome the difficulties - this is a part of the learning process - a skill you must acquire to do well in the course and in the workplace. Document your efforts to resolve your difficulties via the Discussion Forum. If the difficulties cannot be resolved within the group, please contact the Topic Coordinator. • Every student in the group will assess and be assessed by the members of the group. The final mark that you receive for your assignment will be influenced by the results of your peer and self-assessment. • All group communication should be conducted through the group discussion forum on FLO. • Students are randomly placed into groups in workshops. Any student who misses a workshop should contact the Topic Coordinator and administrative staff as soon as possible to be placed into a group. If a student cannot attend a workshop, the Topic Coordinator must be informed by email and supporting documentation must be provided within 14 days of the session for attendance to be waived.

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WIFI AND QR CODES Completion of the allocated tasks in the workshop will form part of your grade (see Statement of Assessment Methods). Your facilitator will provide you with a QR code to scan and it is the student’s responsibility to ensure that completion of the workshop tasks has been registered in FLO. Students will need to be logged into FLO on their device BEFORE scanning the QR code. The Flinders University wireless network is called eduroam. There are two ways in which you can connect to eduroam and these are outlined below.

WiFi Connection to Eduroam See https://students.flinders.edu.au/support/computing/wifi OPTION 1 If you are connecting from a device on campus and you can see eduroam in your list of available wireless networks, then: 1. Select eduroam 2. Enter your [email protected] and then your password 3. Follow the on-screen prompts, including acceptance of certificates OPTION 2 If the above does not work or you want to configure your device for eduroam from home or off campus, then go to https://join.flinders.edu.au/. This will attempt to configure your device automatically for you.

QR Code Scanner for Mobile Devices In order to scan the QR code, you will need a device such as a mobile phone or tablet that can read QR codes and an appropriate app. Recent iOS has this capacity in the camera app and there are many freely available QR code scanner apps available for android. Note – if you do not have a device capable of reading QR codes, you can register the completion of your workshops tasks by clicking on the Workshop Task Completion link under the Workshops module on the MDSC1102 FLO site. Apple Technology • iOS - iPhone and iPad devices running iOS 11 or newer has QR code recognition built into the camera app. • More information at Scan a QR code with your iPhone, iPad, or iPod touch. • For older versions of iOS, search the app store using keywords such as 'QR code' to find free QR code scanners. Android Technology • The Google Lens app supports scanning of QR codes. Download it from the Google Play store.

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WORKSHOP BOOKLET An electronic copy of the Workshop Booklet is provided on FLO (under the Workshops module). It is important that you PRINT and BRING THIS TO THE WORKSHOPS. A suggestion is to print the booklet double-sided and bind the booklet. There will be NO spare copies  ensure that you come prepared.

Workshop Venues The venue for the workshops is the Level 4 Seminar Area. The venue for the Computer Lab is the MTF Lab (Room 5D218). These venues are both located at Flinders Medical Centre (FMC) – see Appendix for location map. Entry to the Level 4 Seminar Area should be via the Level 5 stairs. Prior to the commencement of the session, students must wait at the entrance of the Level 4 Seminar Area until advised that they are able enter. Students will be randomly allocated into groups at this stage. Workshop Materials Workshop materials provided to each group for use within the workshop session MUST be returned to the facilitators at the end of the session.

Legend for the pictures used throughout the Workshop Booklet:

Students are encouraged to bring an electronic device

Students must refer to the facilitator’s materials in order to complete the workshop tasks

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Workshop 1 Disease Outbreak Investigation

HO...